Generally, the FLSA salary basis test requires paying an employee a predetermined amount for every week in which any work is performed, regardless of the quantity. An employer may make deductions from pay for absences of one or more full days if salary replacement benefits are provided under a State disability insurance law or under a State workers’ compensation law. 29 C.F.R. 541.602.
That said, I think the DOL’s Feild Operations Manual allows an employer to may make a bona fide reduction in an employee’s salary because of a “reduction in the normal scheduled workweek” so long as the reduction “is not designed to circumvent the salary basis requirement.” ยง22b00 of the FOH (pdf). and FLSA2004-5. Alternatively, based on those sources, you could possibly convert the employee to non-exempt for the light duy period.
This seems to be a tricky issue, and State law might provide for a different outcome. I would certainly consult with counsel to get a definitive answer to this one.